Basic Information
Locus ID:
Sgl35396
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 56153330 | 56156367 | - | Sgl35396 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 60,982.70 Da | 42.55 | 88.68 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 180 | 345 | 1.84E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 56 | 7.33E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 62 | 404 | 1.9E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 61 | 7.2E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 64 | 10.451268 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04230.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_048499304.1 | putative F-box/LRR-repeat protein At4g15060 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6NKX3 | F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana OX=3702 GN=At2g04230 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J4VK60 | F-box domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_015298 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_11925, gene_1351, gene_1901, gene_1902, gene_23215 ... |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014650 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041540 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11163, Sbi_jg46136, Sbi_jg46137, Sbi_jg46138 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20478, Seu_jg20479 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002378, GOSA_00005474 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35396, Sgl40771, Sgl55731, Sgl60945 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0009890 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1016, evm.TU.LG15.934 |