Basic Information
Locus ID:
Sgl35092
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 53978520 | 53983848 | - | Sgl35092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 148,060.14 Da | 36.99 | 104.56 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 457 | 662 | 6.20867E-97 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1073 | 1294 | 2.74347E-123 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 760 | 1050 | 9.66223E-84 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 145 | 432 | 4.28271E-89 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 774 | 1000 | 1.6E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 484 | 614 | 7.4E-16 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1092 | 1241 | 1.8E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 143 | 411 | 2.5E-20 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 760 | 1061 | 1.83E-45 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1068 | 1302 | 1.21E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 137 | 439 | 4.97E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 481 | 675 | 2.5E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1058 | 1312 | 3.2E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 446 | 710 | 1.2E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 726 | 1056 | 1.9E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 121 | 441 | 4.7E-42 | IPR036640 |
| SMART | SM00382 | AAA_5 | 488 | 662 | 1.7E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1101 | 1293 | 1.4E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 762 | 1038 | 31.83514 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 457 | 685 | 19.021067 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1075 | 1310 | 17.086971 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 145 | 424 | 29.753109 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 587 | 601 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021746601.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6U6 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology