Basic Information
Locus ID:
Sgl33949
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 45123252 | 45129327 | - | Sgl33949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 94,652.78 Da | 36.65 | 77.18 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 384 | 434 | 2.82483E-24 | - |
| Pfam | PF01426 | BAH domain | 129 | 226 | 2.1E-13 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 444 | 803 | 1.4E-33 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 385 | 436 | 3.9E-10 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 285 | 804 | 3.05E-75 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 371 | 439 | 7.28E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 288 | 822 | 1.5E-237 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 598 | 771 | 1.5E-237 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 61 | 225 | 7.1E-42 | IPR043151 |
| SMART | SM00298 | chromo_7 | 384 | 438 | 2.2E-7 | IPR000953 |
| SMART | SM00439 | BAH_4 | 123 | 236 | 5.6E-17 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 123 | 236 | 19.692305 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 286 | 812 | 42.505035 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 385 | 433 | 11.344801 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 403 | 423 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 539 | 552 | 4.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 493 | 507 | 4.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 287 | 303 | 4.7E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 380 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_010666617.2 | putative DNA (cytosine-5)-methyltransferase CMT1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B4R8 | DNA (cytosine-5-)-methyltransferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_003270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology