Basic Information
Locus ID:
Sgl33911
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 44730666 | 44784945 | - | Sgl33911 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 458,024.13 Da | 41.97 | 88.13 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2635 | 2717 | 1.01279E-5 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3142 | 3433 | 5.6E-13 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 5.1E-31 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 575 | 800 | 5.4E-30 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2237 | 2381 | 2.7E-10 | IPR009291 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3683 | 3786 | 8.2E-8 | IPR031645 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1989 | 2157 | 2.7E-11 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 8.9E-67 | IPR031646 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2616 | 2738 | 1.71E-5 | IPR035892 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1629 | 1661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1628 | 1661 | - | - |
| Coils | Coil | Coil | 4112 | 4113 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q07878 | Intermembrane lipid transfer protein VPS13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology