Basic Information
Locus ID:
Sgl32894
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 36109038 | 36119571 | - | Sgl32894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 171,146.56 Da | 40.41 | 81.53 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 876 | 1141 | 2.95962E-50 | - |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 3 | 126 | 8.3E-13 | IPR025558 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 885 | 1120 | 2.4E-37 | IPR000477 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1390 | 1478 | 4.58E-6 | IPR036322 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 824 | 1094 | 2.82E-13 | IPR043502 |
| Gene3D | G3DSA:2.130.10.10 | - | 1380 | 1484 | 1.2E-6 | IPR015943 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 862 | 1144 | 13.077912 | IPR000477 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1451 | 1477 | 8.804123 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1486 | 1526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 181 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01860.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021854772.1 | uncharacterized protein LOC110794134 [Spinacia oleracea] | 0 |
| P08548 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |