Basic Information
Locus ID:
Sgl32842
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 35392000 | 35402347 | + | Sgl32842 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 138,858.94 Da | 49.09 | 78.52 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 656 | 812 | 1.84291E-29 | - |
| CDD | cd12108 | Hr-like | 50 | 176 | 5.50409E-33 | - |
| CDD | cd12108 | Hr-like | 309 | 437 | 1.38548E-14 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1121 | 1164 | 6.26948E-17 | - |
| Pfam | PF13639 | Ring finger domain | 1121 | 1163 | 1.4E-6 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1169 | 1226 | 5.6E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 993 | 1068 | 4.5E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 652 | 813 | 2.0E-9 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 308 | 439 | 1.7E-5 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 52 | 178 | 3.2E-12 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1059 | 1114 | 6.28E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1121 | 1167 | 1.37E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 984 | 1049 | 1.19E-15 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 1193 | 1234 | 1.1E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 46 | 196 | 2.8E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 312 | 455 | 2.8E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 648 | 879 | 3.9E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1117 | 1166 | 6.0E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1122 | 1163 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1058 | 1121 | 29.026829 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 986 | 1055 | 26.164877 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1122 | 1164 | 11.176261 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUB5 | Zinc finger protein BRUTUS OS=Spinacia oleracea OX=3562 GN=SOVF_140190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology