halophFGD

Basic Information

Locus ID: Sgl32313

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA4	24499863	24512628	-	Sgl32313

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.93	97,094.36 Da	43.98	68.57	-0.68

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09274	RNase_HI_RT_Ty3	650	763	1.17454E-49	-
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	618	712	2.4E-27	IPR041577
Pfam	PF03732	Retrotransposon gag protein	333	424	4.3E-12	IPR005162
SUPERFAMILY	SSF56672	DNA/RNA polymerases	553	748	3.85E-66	IPR043502
Gene3D	G3DSA:3.30.70.270	-	565	652	2.8E-32	IPR043128
ProSiteProfiles	PS51257	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	34	6.0	-
MobiDBLite	mobidb-lite	consensus disorder prediction	471	488	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	211	247	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	465	488	-	-
Coils	Coil	Coil	814	834	-	-

KEGG Pathway

KO Term:

K09250 (cellular nucleic acid-binding protein)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_048501350.1	uncharacterized protein LOC125497724 [Beta vulgaris subsp. vulgaris]	0
Swiss-Prot	P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1	0
TrEMBL	A2I5E5	RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	144	Sgl00054, Sgl00059, Sgl00122, Sgl00123, Sgl00785, Sgl03218 ... Sgl03679, Sgl03687, Sgl03723, Sgl03991, Sgl03993, Sgl04037, Sgl04361, Sgl04545, Sgl04569, Sgl04770, Sgl04822, Sgl04824, Sgl04939, Sgl05054, Sgl05127, Sgl05190, Sgl05796, Sgl08539, Sgl08580, Sgl08790, Sgl08798, Sgl08830, Sgl09430, Sgl09591, Sgl09616, Sgl09814, Sgl09873, Sgl10006, Sgl10108, Sgl13177, Sgl13755, Sgl14041, Sgl14184, Sgl18330, Sgl18480, Sgl19162, Sgl19200, Sgl19418, Sgl19458, Sgl19545, Sgl20479, Sgl20541, Sgl20748, Sgl21403, Sgl21838, Sgl22031, Sgl25859, Sgl25920, Sgl26130, Sgl26728, Sgl27312, Sgl30940, Sgl31162, Sgl32072, Sgl32092, Sgl32156, Sgl32313, Sgl32394, Sgl32643, Sgl32876, Sgl32884, Sgl36504, Sgl36546, Sgl37358, Sgl37387, Sgl37610, Sgl37693, Sgl37935, Sgl38147, Sgl43535, Sgl44020, Sgl44110, Sgl44120, Sgl44521, Sgl44576, Sgl44829, Sgl45070, Sgl46105, Sgl47766, Sgl48331, Sgl48789, Sgl48877, Sgl49024, Sgl49287, Sgl49294, Sgl49339, Sgl49591, Sgl49839, Sgl50799, Sgl52998, Sgl53097, Sgl53337, Sgl53592, Sgl53793, Sgl53890, Sgl58273, Sgl58399, Sgl58853, Sgl58868, Sgl59058, Sgl59221, Sgl64584, Sgl65072, Sgl65136, Sgl65556, Sgl69033, Sgl69559, Sgl69651, Sgl69879, Sgl71961, Sgl71964, Sgl72009, Sgl72023, Sgl72113, Sgl72177, Sgl72187, Sgl72319, Sgl74411, Sgl75527, Sgl75571, Sgl75720, Sgl75740, Sgl75751, Sgl77963, Sgl78783, Sgl78923, Sgl79041, Sgl79422, Sgl79476, Sgl79562, Sgl79692, Sgl79825, Sgl81252, Sgl81496, Sgl81889, Sgl81952, Sgl82030, Sgl82151