Basic Information
Locus ID:
Sgl31834
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 16544888 | 16553985 | + | Sgl31834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 115,724.76 Da | 32.15 | 82.22 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 44 | 320 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 454 | 2.0E-21 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1008 | 1.4E-9 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 606 | 819 | 4.9E-43 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 357 | 5.1E-95 | IPR000602 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 467 | 1012 | 2.35E-132 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 361 | 455 | 5.23E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 33 | 358 | 1.67E-108 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 601 | 868 | 1.6E-87 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 325 | 2.1E-122 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 472 | 583 | 2.3E-28 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 888 | 1017 | 2.0E-33 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 326 | 404 | 4.3E-28 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 405 | 460 | 7.2E-23 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 362 | 436 | 5.3E-23 | IPR015341 |
| Coils | Coil | Coil | 949 | 969 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682967.2 | alpha-mannosidase At3g26720 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RLN6 | Alpha-mannosidase OS=Spinacia oleracea OX=3562 GN=SOVF_052620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology