Basic Information
Locus ID:
Sgl31833
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 16534242 | 16543747 | + | Sgl31833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 113,742.32 Da | 34.63 | 84.73 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 39 | 314 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 356 | 449 | 1.3E-20 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 600 | 814 | 6.7E-44 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 896 | 1000 | 1.9E-10 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 40 | 351 | 7.4E-96 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 28 | 352 | 2.33E-112 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 356 | 459 | 7.52E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 454 | 1003 | 1.13E-140 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 400 | 456 | 7.0E-20 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 599 | 862 | 2.5E-91 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 471 | 598 | 1.3E-27 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 881 | 1008 | 4.4E-37 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 39 | 319 | 6.3E-124 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 399 | 1.3E-30 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 432 | 5.2E-21 | IPR015341 |
| Coils | Coil | Coil | 943 | 963 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682958.2 | alpha-mannosidase At3g26720 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MZI9 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology