Basic Information
Locus ID:
Sgl31812
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Prohibitin-3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 16367415 | 16370445 | + | Sgl31812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 30,807.97 Da | 39.47 | 99.64 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03401 | SPFH_prohibitin | 32 | 226 | 1.27652E-90 | IPR000163 |
| Pfam | PF01145 | SPFH domain / Band 7 family | 34 | 215 | 4.3E-20 | IPR001107 |
| SUPERFAMILY | SSF117892 | Band 7/SPFH domain | 63 | 199 | 2.35E-15 | IPR036013 |
| Gene3D | G3DSA:3.30.479.30 | Band 7 domain | 60 | 194 | 1.4E-7 | IPR036013 |
| SMART | SM00244 | PHB_4 | 31 | 192 | 1.6E-45 | IPR001107 |
| PRINTS | PR00679 | Prohibitin signature | 187 | 210 | 6.7E-69 | IPR000163 |
| PRINTS | PR00679 | Prohibitin signature | 93 | 112 | 6.7E-69 | IPR000163 |
| PRINTS | PR00679 | Prohibitin signature | 162 | 181 | 6.7E-69 | IPR000163 |
| PRINTS | PR00679 | Prohibitin signature | 210 | 226 | 6.7E-69 | IPR000163 |
| PRINTS | PR00679 | Prohibitin signature | 139 | 155 | 6.7E-69 | IPR000163 |
| PRINTS | PR00679 | Prohibitin signature | 75 | 91 | 6.7E-69 | IPR000163 |
| PRINTS | PR00679 | Prohibitin signature | 116 | 134 | 6.7E-69 | IPR000163 |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40770.1 | prohibitin 3. prohibitin 3 | 0 |
| RefSeq | XP_010682210.1 | prohibitin-3, mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| O04331 | Prohibitin-3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R4A9 | Prohibitin OS=Spinacia oleracea OX=3562 GN=SOVF_108200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17720, jg19884, jg26767 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24955 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012449 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g146320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42471, Sbi_jg45085 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27080 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002233 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31812, Sgl83302 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001157, gene:ENSEOMG00000001872 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0009380, CQ.Regalona.r1.6BG0009900 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30023910, pistato.v30023940, pistato.v30024170 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G002020, scaffold025969G000020 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717346, gene-LOC103721125, gene-LOC120107735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2838.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G20471, Ftri18G27967 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G27280.2, AT5G14300.1, AT5G40770.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004748m.g.v1.0, Thhalv10015345m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g16430.v2.2, Sp7g01130.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g025780.2N, BniB02g067430.2N, BniB07g035840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1964 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2030 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g04430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0408s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g05350 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2285 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.193 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027801 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31762, Lb7G35309 |
| Poaceae | Echinochloa crus-galli | 4 | AH09.1260, BH06.2049, CH07.2240, CH09.1477 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0135260, gene-QOZ80_2BG0190870 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0173550.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023221, gene-QYE76_044431 |
| Poaceae | Oryza coarctata | 3 | Oco03G013610, Oco07G007750, Oco08G007660 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g37000.1, LOC_Os04g38900.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G174800, gene-BS78_06G123800 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G009010, Chr09G013300, Chr13G009170, Chr15G010560 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G570600, Tel6E01G393000, Tel6E01G458100 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG047760, gene_TRIDC2BG050270 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G337100.1.cds1, TraesCS2B02G344800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb245230_P001, Zm00001eb424310_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18701, nbis-gene-29819, nbis-gene-53735 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g13766, Zma_g16560, Zma_g19849, Zma_g21408 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2619, evm.TU.LG14.1754 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g26050, gene.Posoc08g00320, gene.Posoc08g00340 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1989, evm.TU.Scaffold_6_RagTag.84 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14898 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12100, nbisL1-mrna-602 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3141, nbisL1-mrna-76 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.60, evm.TU.utg000019l.23 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007252 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11916, nbisL1-mrna-11991 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17504 |
| Salicaceae | Populus euphratica | 3 | populus_peu01187, populus_peu05203, populus_peu24406 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627050, gene-LOC132640532 |
| Solanaceae | Solanum chilense | 3 | SOLCI000690300, SOLCI002063300, SOLCI006160700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004791, gene-LOC107004960, gene-LOC107020527 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13879_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3512 |
| Zosteraceae | Zostera marina | 1 | Zosma02g06930.v3.1 |