Basic Information
Locus ID:
Sgl31560
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposon protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 12099472 | 12106623 | - | Sgl31560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 110,309.63 Da | 54.76 | 63.63 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 728 | 855 | 1.8E-14 | IPR004252 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 114 | 215 | 9.1E-34 | IPR025452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 554 | - | - |
| Coils | Coil | Coil | 531 | 551 | - | - |
| Coils | Coil | Coil | 476 | 496 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048491649.1 | uncharacterized protein LOC125492938 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803ND29 | DUF4218 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg61541 |
| Amaranthaceae | Suaeda glauca | 65 | Sgl03681, Sgl04249, Sgl04994, Sgl04995, Sgl08792, Sgl09205 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0009940 |