Basic Information
Locus ID:
Sgl31483
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Retroviral aspartyl protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 10333483 | 10334583 | + | Sgl31483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 37,720.38 Da | 38.72 | 65.73 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 230 | 295 | 1.14354E-8 | - |
| Pfam | PF08284 | Retroviral aspartyl protease | 244 | 312 | 5.2E-15 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 234 | 317 | 3.8E-10 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 97 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021738194.1 | uncharacterized protein LOC110704684 [Chenopodium quinoa] | 0 |
| TrEMBL | A2I5E5 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g086710, BVRB_8g189320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25647, Sbi_jg35810 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1509, Seu_jg7247 |
| Amaranthaceae | Suaeda glauca | 30 | Sgl05059, Sgl08276, Sgl09509, Sgl10099, Sgl13129, Sgl14136 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052022 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0010420 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26473, Lb8G36574 |