Basic Information
Locus ID:
Sgl31271
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 6905089 | 6922709 | - | Sgl31271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 177,144.22 Da | 45.98 | 66.53 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 43 | 82 | 5.3E-10 | IPR014977 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1194 | 1292 | 1.2E-14 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 753 | 1329 | 9.06E-33 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 742 | 996 | 2.7E-86 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1117 | 1318 | 4.2E-69 | - |
| SMART | SM00558 | cupin_9 | 860 | 1309 | 2.4E-74 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 41 | 91 | 17.069231 | IPR014977 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 879 | 1309 | 24.530739 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1341 | 1366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1341 | 1425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1014 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1387 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 975 | 1014 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1409 | 1425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1367 | 1386 | - | - |
| Coils | Coil | Coil | 274 | 294 | - | - |
| Coils | Coil | Coil | 134 | 161 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11950.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_021842001.1 | lysine-specific demethylase JMJ25-like [Spinacia oleracea] | 0 |
| C0SUU8 | Lysine-specific demethylase JMJ26 OS=Arabidopsis thaliana OX=3702 GN=JMJ26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJ28 | Lysine-specific demethylase JMJ25-like OS=Spinacia oleracea OX=3562 GN=SOVF_061180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology