Basic Information
Locus ID:
Sgl31135
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 4252411 | 4254679 | - | Sgl31135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 52,191.63 Da | 36.81 | 75.49 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 14 | 99 | 9.01599E-17 | - |
| CDD | cd04476 | RPA1_DBD_C | 238 | 395 | 5.78495E-25 | IPR013955 |
| Pfam | PF02721 | Domain of unknown function DUF223 | 38 | 116 | 3.5E-6 | IPR003871 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 254 | 374 | 5.6E-17 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 2 | 106 | 3.38E-11 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 235 | 397 | 3.6E-26 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 106 | 1.5E-14 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 225 | 397 | 1.0E-31 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 442 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05642.1 | Nucleic acid-binding, OB-fold-like protein. | 0 |
| RefSeq | XP_048503654.1 | replication factor A protein 1-like isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q10Q08 | Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7U5Z6 | Rep_fac-A_C domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology