Basic Information
Locus ID:
Sgl31025
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA4 | 2087310 | 2088371 | - | Sgl31025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 15,375.53 Da | 73.45 | 69.77 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 2 | 26 | 2.9E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 59 | 9.36E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 50 | 2.7E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1 | 27 | 8.992817 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 3 | 12 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 130 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44280.3 | - | 0 |
| RefSeq | XP_019432121.1 | PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X3 [Lupinus angustifolius] | 0 |
| Q9FKW0 | Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana OX=3702 GN=RING1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9AXH8 | RING-type domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||