Basic Information
Locus ID:
Sgl30712
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc finger BED domain-containing protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 60624395 | 60626403 | - | Sgl30712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 63,581.11 Da | 30.19 | 78.12 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02892 | BED zinc finger | 50 | 95 | 1.5E-4 | IPR003656 |
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 487 | 543 | 2.5E-19 | IPR008906 |
| Pfam | PF14372 | Domain of unknown function (DUF4413) | 337 | 438 | 8.0E-30 | IPR025525 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 50 | 102 | 7.85E-6 | IPR036236 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 174 | 544 | 5.01E-61 | IPR012337 |
| SMART | SM00614 | bed5 | 47 | 100 | 1.4E-11 | - |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 47 | 105 | 10.278945 | IPR003656 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| Coils | Coil | Coil | 550 | 553 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42170.2 | - | 0 |
| RefSeq | XP_019104921.2 | uncharacterized protein LOC104893683 [Beta vulgaris subsp. vulgaris] | 0 |
| P08770 | Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MF79 | BED-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_18523, gene_18908, gene_24739, gene_757 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah002403, Ah025340, Ah025341, Ah035896 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g136250, BVRB_7g170450 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg16564, Sbi_jg23483, Sbi_jg33887, Sbi_jg40651 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14931, Seu_jg27982 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl18348, Sgl25401, Sgl30582, Sgl30712, Sgl32903, Sgl38164 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006175, gene:ENSEOMG00000019503 |
| Amaranthaceae | Chenopodium quinoa | 30 | CQ.Regalona.r1.1AG0015170, CQ.Regalona.r1.1BG0000790 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009065 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16891 |
| Zosteraceae | Zostera marina | 2 | Zosma04g10920.v3.1, Zosma04g21000.v3.1 |