Basic Information
Locus ID:
Sgl30496
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 57910896 | 57912163 | + | Sgl30496 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 31,141.91 Da | 52.75 | 81.14 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56219 | DNase I-like | 68 | 206 | 3.89E-8 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 69 | 244 | 1.5E-6 | IPR036691 |
| Coils | Coil | Coil | 232 | 252 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048491220.1 | uncharacterized protein LOC125492618 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A2N9EFE1 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1374 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |