Basic Information
Locus ID:
Sgl30420
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
acid phosphatase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 56996045 | 57001054 | + | Sgl30420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 100,930.31 Da | 36.87 | 87.07 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 548 | 795 | 9.85847E-57 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 554 | 784 | 5.6E-48 | IPR000477 |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 70 | 290 | 1.8E-6 | IPR005135 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 506 | 782 | 3.38E-21 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 65 | 295 | 1.28E-28 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 62 | 296 | 4.6E-31 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 535 | 804 | 16.132263 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 845 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| O00370 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2N9INX5 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53563 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||