Basic Information
Locus ID:
Sgl30306
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 55713974 | 55737620 | - | Sgl30306 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 104,612.56 Da | 49.95 | 71.38 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 650 | 779 | 1.56654E-62 | - |
| CDD | cd00201 | WW | 294 | 323 | 6.6022E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 662 | 770 | 7.1E-34 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 455 | 625 | 7.4E-49 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 503 | 786 | 9.47E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 285 | 323 | 1.03E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 640 | 811 | 1.6E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 407 | 639 | 3.2E-87 | IPR027417 |
| SMART | SM00487 | ultradead3 | 450 | 653 | 2.4E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 690 | 770 | 5.6E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 292 | 325 | 2.8E-5 | IPR001202 |
| SMART | SM00614 | bed5 | 56 | 109 | 2.2E-11 | - |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 56 | 114 | 9.784496 | IPR003656 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 291 | 325 | 11.0141 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 462 | 636 | 30.138346 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 431 | 459 | 10.393079 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 665 | 809 | 25.845482 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 582 | 590 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 297 | 323 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 952 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 933 | 952 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 389 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_010694508.1 | ATP-dependent RNA helicase-like protein DB10 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NBD2 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology