Basic Information
Locus ID:
Sgl29769
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 51316277 | 51322717 | + | Sgl29769 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 97,219.99 Da | 54.39 | 71.00 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 674 | 717 | 3.3767E-18 | - |
| CDD | cd16461 | RING-H2_EL5_like | 127 | 170 | 1.09212E-17 | - |
| CDD | cd16461 | RING-H2_EL5_like | 372 | 415 | 1.09212E-17 | - |
| Pfam | PF13639 | Ring finger domain | 674 | 717 | 2.4E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 127 | 170 | 2.2E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 372 | 415 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 668 | 724 | 1.09E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 174 | 2.15E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 370 | 419 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 176 | 2.4E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 633 | 722 | 5.4E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 349 | 424 | 3.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 128 | 169 | 1.2E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 373 | 414 | 1.2E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 675 | 716 | 3.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 675 | 717 | 12.651561 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 128 | 170 | 12.563043 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 373 | 415 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 867 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 233 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_021840775.1 | E3 ubiquitin-protein ligase ATL31-like [Spinacia oleracea] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RYD7 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_014790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology