Basic Information
Locus ID:
Sgl29700
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 50845904 | 50852102 | - | Sgl29700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 102,233.76 Da | 59.46 | 46.88 | -1.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 381 | 409 | 2.3E-10 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 415 | 442 | 2.7E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 374 | 410 | 2.31E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 373 | 411 | 5.6E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 412 | 443 | 2.4E-8 | - |
| SMART | SM00547 | zf_4 | 383 | 407 | 2.9E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 416 | 440 | 2.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 381 | 410 | 10.274413 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 414 | 443 | 9.450083 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 418 | 437 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 385 | 404 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 825 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 894 | - | - |
| Coils | Coil | Coil | 74 | 94 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R1A6 | RanBP2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology