Basic Information
Locus ID:
Sgl29605
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 50219450 | 50229805 | - | Sgl29605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 119,167.98 Da | 38.84 | 81.30 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 855 | 888 | 0.032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 482 | 0.0073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 331 | 560 | 4.21E-28 | IPR036322 |
| SUPERFAMILY | SSF50993 | Peptidase/esterase 'gauge' domain | 829 | 1071 | 8.37E-15 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 487 | 893 | 2.82E-39 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 535 | 767 | 4.8E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 773 | 1040 | 2.7E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 297 | 534 | 1.0E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 938 | 980 | 6.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 571 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 482 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 994 | 1035 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 806 | 846 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 525 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 574 | 614 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 435 | 7.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.4E-13 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 849 | 888 | 6.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 767 | 803 | 310.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.296669 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 342 | 384 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 856 | 897 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 856 | 891 | 10.337415 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 469 | 483 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1074 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1042 | 1074 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021742617.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIJ6 | Topless-related protein 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_060520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology