halophFGD

Basic Information

Locus ID: Sgl29570

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: Belongs to the helicase family. RecQ subfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB3	50007170	50022709	-	Sgl29570

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.38	163,978.58 Da	35.82	86.25	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17920	DEXHc_RecQ	1041	1238	6.19566E-90	-
CDD	cd18794	SF2_C_RecQ	1239	1372	1.0402E-63	-
Pfam	PF13041	PPR repeat family	392	440	1.3E-16	IPR002885
Pfam	PF13041	PPR repeat family	462	510	3.8E-17	IPR002885
Pfam	PF13041	PPR repeat family	181	230	5.0E-13	IPR002885
Pfam	PF13041	PPR repeat family	535	581	1.7E-15	IPR002885
Pfam	PF13041	PPR repeat family	322	369	9.1E-15	IPR002885
Pfam	PF13041	PPR repeat family	672	719	2.0E-13	IPR002885
Pfam	PF00271	Helicase conserved C-terminal domain	1266	1362	7.1E-15	IPR001650
Pfam	PF00270	DEAD/DEAH box helicase	1049	1215	9.9E-16	IPR011545
Pfam	PF16124	RecQ zinc-binding	1375	1443	1.3E-12	IPR032284
Pfam	PF13041	PPR repeat family	602	650	2.2E-17	IPR002885
Pfam	PF13041	PPR repeat family	252	301	3.8E-19	IPR002885
SUPERFAMILY	SSF81901	HCP-like	188	398	1.33E-5	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	1086	1383	1.05E-51	IPR027417
SUPERFAMILY	SSF81901	HCP-like	369	560	8.37E-8	-
Gene3D	G3DSA:3.40.50.300	-	1005	1238	2.9E-81	IPR027417
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	85	246	5.5E-30	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	620	769	2.5E-38	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	247	318	1.3E-23	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	319	407	1.5E-33	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	514	619	2.1E-38	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	408	513	7.3E-37	IPR011990
Gene3D	G3DSA:3.40.50.300	-	1239	1447	2.1E-60	IPR027417
SMART	SM00490	helicmild6	1281	1363	2.8E-23	IPR001650
SMART	SM00487	ultradead3	1043	1247	8.0E-27	IPR014001
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	395	429	1.2E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	326	359	5.7E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	535	569	2.3E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	290	322	5.9E-6	IPR002885
TIGRFAM	TIGR00614	recQ_fam: ATP-dependent DNA helicase, RecQ family	1041	1445	1.6E-151	IPR004589
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	675	709	3.7E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	360	393	3.2E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	430	464	1.0E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	465	499	1.6E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	640	673	3.2E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	605	639	1.3E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	500	533	2.5E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	219	253	2.1E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	711	739	5.0E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	255	289	6.6E-10	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	184	218	5.2E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	570	604	9.8E-10	IPR002885
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	1260	1403	18.983868	IPR001650
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	533	567	13.581108	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	147	181	8.856788	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	603	637	13.296114	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	288	322	12.199985	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	358	392	13.109773	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	253	287	12.83574	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	428	462	11.849223	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	323	357	12.572669	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	638	672	12.375365	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	463	497	12.386327	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	217	251	9.624079	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	393	427	13.011121	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	498	532	12.967276	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	708	742	10.040608	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	673	707	12.430172	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	568	602	12.726127	IPR002885
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	1055	1231	19.94647	IPR014001
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	182	216	10.544828	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	928	986	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	957	986	-	-

Gene Ontology

Biological Process:

GO:0006310 (DNA recombination)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004386 (helicase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K10901 (bloom syndrome protein [EC:5.6.2.4])

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination) ko03460 (Fanconi anemia pathway) map03460 (Fanconi anemia pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05740.1	RECQ helicase l1.
RefSeq	XP_010674161.1	ATP-dependent DNA helicase Q-like 1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9FT74	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1
TrEMBL	A0A0K9QQ50	ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg28255, jg28388, jg3112, jg32942, jg35691, jg36492, jg36904 ... jg511
Aizoaceae	Mesembryanthemum crystallinum	5	gene_10373, gene_10948, gene_21402, gene_2204, gene_5986
Amaranthaceae	Atriplex hortensis	6	Ah004683, Ah005652, Ah007645, Ah007650, Ah015102, Ah026211
Amaranthaceae	Beta vulgaris	4	BVRB_4g076650, BVRB_4g085250, BVRB_5g108290, BVRB_9g219470
Amaranthaceae	Salicornia bigelovii	17	Sbi_jg11581, Sbi_jg11582, Sbi_jg11583, Sbi_jg11584 ... Sbi_jg17232, Sbi_jg19109, Sbi_jg19110, Sbi_jg24320, Sbi_jg24683, Sbi_jg24684, Sbi_jg37535, Sbi_jg41810, Sbi_jg46522, Sbi_jg61848, Sbi_jg61849, Sbi_jg8151, Sbi_jg8541
Amaranthaceae	Salicornia europaea	5	Seu_jg11870, Seu_jg20055, Seu_jg20834, Seu_jg491, Seu_jg5377
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00001730, GOSA_00005158, GOSA_00005159, GOSA_00015416 ... GOSA_00022721
Amaranthaceae	Suaeda glauca	15	Sgl21220, Sgl21221, Sgl24395, Sgl26558, Sgl26559, Sgl26564 ... Sgl26565, Sgl26566, Sgl29570, Sgl42783, Sgl47537, Sgl52510, Sgl56386, Sgl57760, Sgl61917
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000007815, gene:ENSEOMG00000009554 ... gene:ENSEOMG00000011352, gene:ENSEOMG00000012114, gene:ENSEOMG00000015846, gene:ENSEOMG00000022572, gene:ENSEOMG00000023795, gene:ENSEOMG00000024703, gene:ENSEOMG00000027272, gene:ENSEOMG00000035632, gene:ENSEOMG00000038441, gene:ENSEOMG00000042429, gene:ENSEOMG00000043166, gene:ENSEOMG00000044456, gene:ENSEOMG00000052042
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.4AG0007300, CQ.Regalona.r1.4BG0007530 ... CQ.Regalona.r1.4BG0018000, CQ.Regalona.r1.5AG0000910, CQ.Regalona.r1.5BG0010520, CQ.Regalona.r1.7BG0009780, CQ.Regalona.r1.8AG0016250, CQ.Regalona.r1.8BG0017330, CQ.Regalona.r1.9AG0014850
Anacardiaceae	Pistacia vera	9	pistato.v30020930, pistato.v30082040, pistato.v30082220 ... pistato.v30082310, pistato.v30082330, pistato.v30101500, pistato.v30101510, pistato.v30131840, pistato.v30211750
Apiaceae	Apium graveolens	6	Ag6G01868, Ag6G02028, Ag7G00134, Ag7G00136, Ag7G00222 ... Ag8G00366
Arecaceae	Cocos nucifera	5	COCNU_01G001480, COCNU_03G004660, COCNU_07G015560 ... COCNU_15G002740, scaffold023055G000040
Arecaceae	Phoenix dactylifera	6	gene-LOC103697005, gene-LOC103701408, gene-LOC103702179 ... gene-LOC103709371, gene-LOC103716081, gene-LOC120108368
Asparagaceae	Asparagus officinalis	8	AsparagusV1_02.2169.V1.1, AsparagusV1_04.1057.V1.1 ... AsparagusV1_05.2249.V1.1, AsparagusV1_07.771.V1.1, AsparagusV1_08.2684.V1.1, AsparagusV1_08.2685.V1.1, AsparagusV1_08.2792.V1.1, AsparagusV1_09.722.V1.1
Asteraceae	Flaveria trinervia	6	Ftri12G31397, Ftri14G02097, Ftri14G26220, Ftri15G18536 ... Ftri3G15988, Ftri4G04924
Brassicaceae	Arabidopsis thaliana	5	AT1G10930.1, AT1G31360.1, AT1G60930.1, AT3G05740.1 ... AT4G35740.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10006602m.g.v1.0, Thhalv10006954m.g.v1.0 ... Thhalv10020334m.g.v1.0, Thhalv10023226m.g.v1.0, Thhalv10024545m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g09640.v2.2, Sp1g27200.v2.2, Sp2g03660.v2.2 ... Sp3g04620.v2.2, Sp7g33500.v2.2
Brassicaceae	Brassica nigra	6	BniB01g057930.2N, BniB02g005920.2N, BniB03g004180.2N ... BniB03g013340.2N, BniB04g020590.2N, BniB07g019200.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0024, Ceq06G1127, Ceq09G0389, Ceq09G0399
Casuarinaceae	Casuarina glauca	5	Cgl03G0030, Cgl06G0692, Cgl06G0793, Cgl06G1174, Cgl09G0429
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno04g13480, gene.Cymno05g13160, gene.Cymno07g01730 ... gene.Cymno08g03930, gene.Cymno09g01390, gene.Cymno18g04950
Dunaliellaceae	Dunaliella salina	7	Dusal.0020s00027.v1.0, Dusal.0020s00028.v1.0 ... Dusal.0020s00029.v1.0, Dusal.0117s00007.v1.0, Dusal.0209s00011.v1.0, Dusal.0312s00009.v1.0, Dusal.0312s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g30250, gene.Thate02g06120, gene.Thate06g06100 ... gene.Thate06g09850, gene.Thate09g19510
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8263
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.509, evm.TU.LG02.2837, evm.TU.LG03.2526 ... evm.TU.LG05.926, evm.TU.LG08.757
Plantaginaceae	Plantago ovata	5	Pov_00001994, Pov_00003378, Pov_00003709, Pov_00036705 ... Pov_00039241
Plumbaginaceae	Limonium bicolor	7	Lb1G08105, Lb1G08107, Lb2G14222, Lb5G26915, Lb5G29560 ... Lb5G29606, Lb8G35696
Poaceae	Echinochloa crus-galli	13	AH03.4079, AH04.2158, AH07.331, AH07.3692, BH03.1658 ... BH04.2336, BH04.2341, BH07.3505, BH07.433, CH03.1812, CH03.4491, CH04.2578, CH07.3580
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0101190, gene-QOZ80_2AG0148060 ... gene-QOZ80_2BG0154570, gene-QOZ80_2BG0203460, gene-QOZ80_2BG0203470, gene-QOZ80_7BG0613160, gene-QOZ80_9AG0671310, gene-QOZ80_9AG0692270, gene-QOZ80_9BG0694780, gene-QOZ80_9BG0718310
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0111650.1, HORVU.MOREX.r3.2HG0169030.1 ... HORVU.MOREX.r3.4HG0354110.1, HORVU.MOREX.r3.4HG0362480.1, HORVU.MOREX.r3.6HG0620770.1
Poaceae	Lolium multiflorum	6	gene-QYE76_016504, gene-QYE76_025762, gene-QYE76_025763 ... gene-QYE76_044072, gene-QYE76_065337, gene-QYE76_065610
Poaceae	Oryza coarctata	9	Oco03G023420, Oco04G024000, Oco07G006170, Oco08G006110 ... Oco13G016010, Oco14G016830, Oco21G009650, Oco22G010950, Oco22G011660
Poaceae	Paspalum vaginatum	6	gene-BS78_01G266600, gene-BS78_02G392600, gene-BS78_K262600 ... gene-BS78_04G033600, gene-BS78_04G296900, gene-BS78_05G256200
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0103464, Pt_Chr0103556, Pt_Chr0203032, Pt_Chr0206934 ... Pt_Chr0302632, Pt_Chr0302666, Pt_Chr0305440, Pt_Chr0305467, Pt_Chr0604974, Pt_Chr0604976
Poaceae	Sporobolus alterniflorus	12	Chr07G013990, Chr0G002400, Chr0G003660, Chr0G012030 ... Chr0G029140, Chr0G032350, Chr23G019700, Chr24G012260, Chr26G000220, Chr26G000230, Chr26G000240, Chr31G008460
Poaceae	Thinopyrum elongatum	5	Tel2E01G226200, Tel2E01G537900, Tel4E01G215000 ... Tel4E01G228200, Tel6E01G603000
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG012300, gene_TRIDC2AG044270 ... gene_TRIDC2BG015080, gene_TRIDC2BG046980, gene_TRIDC4AG027310, gene_TRIDC4AG028650, gene_TRIDC4BG019850, gene_TRIDC4BG021710, gene_TRIDC6AG050960, gene_TRIDC6BG059650
Poaceae	Triticum aestivum	15	TraesCS2A02G103300.1, TraesCS2A02G304900.1 ... TraesCS2B02G120600.1, TraesCS2B02G321700.1, TraesCS2D02G102800.1, TraesCS2D02G303500.1, TraesCS4A02G170100.1, TraesCS4A02G178600.5, TraesCS4B02G126600.1, TraesCS4B02G138800.1, TraesCS4D02G133500.1, TraesCS4D02G144400.2, TraesCS6A02G339900.1, TraesCS6B02G371000.2, TraesCS6D02G320500.1
Poaceae	Zea mays	7	Zm00001eb026880_P004, Zm00001eb165270_P001 ... Zm00001eb231860_P001, Zm00001eb239640_P001, Zm00001eb257010_P001, Zm00001eb330800_P002, Zm00001eb431670_P001
Poaceae	Zoysia japonica	6	nbis-gene-33262, nbis-gene-33765, nbis-gene-45943 ... nbis-gene-45945, nbis-gene-45999, nbis-gene-8520
Poaceae	Zoysia macrostachya	6	Zma_g12171, Zma_g14558, Zma_g14559, Zma_g19176, Zma_g24573 ... Zma_g7958
Portulacaceae	Portulaca oleracea	12	evm.TU.LG01.469, evm.TU.LG02.2474, evm.TU.LG02.2475 ... evm.TU.LG04.291, evm.TU.LG06.1256, evm.TU.LG08.742, evm.TU.LG10.556, evm.TU.LG11.604, evm.TU.LG17.567, evm.TU.LG22.1186, evm.TU.LG23.694, evm.TU.LG23.695
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g28100, gene.Posoc01g30810, gene.Posoc05g11510 ... gene.Posoc05g19370, gene.Posoc07g02060, gene.Posoc08g03910
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_14_RagTag.743, evm.TU.Scaffold_1_RagTag.73 ... evm.TU.Scaffold_1_RagTag.787, evm.TU.Scaffold_6_RagTag.2163
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-16970, nbisL1-mrna-17701, nbisL1-mrna-7310 ... nbisL1-mrna-8202
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12996, nbisL1-mrna-13389, nbisL1-mrna-17648 ... nbisL1-mrna-5172
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-11667, nbisL1-mrna-11668, nbisL1-mrna-17086 ... nbisL1-mrna-5159, nbisL1-mrna-5799
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000007l.8, evm.TU.utg000011l.1329 ... evm.TU.utg000012l.50, evm.TU.utg000012l.504
Rhizophoraceae	Kandelia obovata	4	Maker00007012, Maker00011357, Maker00011494, Maker00015978
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-15706, nbisL1-mrna-15707, nbisL1-mrna-15843 ... nbisL1-mrna-7908, nbisL1-mrna-8301
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-2951, nbisL1-mrna-67, nbisL1-mrna-897 ... nbisL1-mrna-9019, nbisL1-mrna-9020
Salicaceae	Populus euphratica	7	populus_peu13308, populus_peu14072, populus_peu17048 ... populus_peu17049, populus_peu33352, populus_peu33356, populus_peu34153
Solanaceae	Lycium barbarum	7	gene-LOC132598421, gene-LOC132598678, gene-LOC132614398 ... gene-LOC132616885, gene-LOC132635550, gene-LOC132635553, gene-LOC132644378
Solanaceae	Solanum chilense	5	SOLCI000829600, SOLCI001635100, SOLCI002212700 ... SOLCI002906700, SOLCI003190000
Solanaceae	Solanum pennellii	5	gene-LOC107012022, gene-LOC107020301, gene-LOC107024232 ... gene-LOC107029016, gene-LOC107031384
Tamaricaceae	Reaumuria soongarica	6	STRG.14383_chr08_-, gene_10751, gene_16133, gene_3038 ... gene_6451, gene_8163
Tamaricaceae	Tamarix chinensis	7	TC01G1360, TC01G1361, TC09G0552, TC10G1035, TC10G1036 ... TC11G2030, TC11G2416
Zosteraceae	Zostera marina	6	Zosma01g27830.v3.1, Zosma01g28950.v3.1, Zosma03g06920.v3.1 ... Zosma05g02290.v3.1, Zosma05g16550.v3.1, Zosma05g22360.v3.1