Basic Information
Locus ID:
Sgl29277
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 48194045 | 48197350 | + | Sgl29277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 53,358.71 Da | 44.12 | 75.62 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 118 | 441 | 3.7E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 83 | 473 | 9.27E-122 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 74 | 478 | 2.7E-116 | IPR012334 |
| SMART | SM00710 | pbh1 | 280 | 301 | 110.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 333 | 354 | 0.37 | IPR006626 |
| SMART | SM00710 | pbh1 | 303 | 323 | 7300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 253 | 279 | 93.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 362 | 383 | 3100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 310 | 323 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021734520.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KN40 | Polygalacturonase At1g80170 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology