Basic Information
Locus ID:
Sgl28979
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 46202927 | 46209537 | - | Sgl28979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 97,681.41 Da | 36.45 | 78.88 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 413 | 469 | 1.28808E-29 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 431 | 470 | 2.7E-8 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 474 | 836 | 2.2E-32 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 300 | 837 | 3.05E-75 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 400 | 471 | 8.25E-12 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 287 | 390 | 7.1E-13 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 412 | 854 | 2.6E-221 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 632 | 803 | 2.6E-221 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 74 | 240 | 1.0E-46 | IPR043151 |
| SMART | SM00439 | BAH_4 | 136 | 255 | 2.7E-12 | IPR001025 |
| SMART | SM00298 | chromo_7 | 413 | 472 | 1.0E-7 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 136 | 255 | 16.002098 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 300 | 844 | 43.610695 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 414 | 470 | 10.9828 | IPR000953 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 527 | 541 | 1.9E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 301 | 317 | 1.9E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 573 | 586 | 1.9E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 68 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021771965.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R7E9 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_103070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology