Basic Information
Locus ID:
Sgl28806
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
AI-2E family transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 44589286 | 44591782 | - | Sgl28806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 82,783.14 Da | 48.35 | 98.30 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01594 | AI-2E family transporter | 557 | 702 | 8.5E-11 | IPR002549 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 176 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55960.1 | 0 | |
| RefSeq | XP_048498398.1 | uncharacterized protein LOC109133538 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0J8CKL1 | Lipase_3 domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g090800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20201, jg21631 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12119, gene_12120 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009105 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g090790, BVRB_4g090800 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18561, Sbi_jg36971 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4832 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017299, GOSA_00017300 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23597, Sgl23598, Sgl28805, Sgl28806 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010448, gene:ENSEOMG00000043892 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0000550, CQ.Regalona.r1.2BG0000560 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151880, pistato.v30152110 |
| Apiaceae | Apium graveolens | 1 | Ag11G03702 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G013670, scaffold015097G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697170, gene-LOC103716785 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.45.V1.1, AsparagusV1_01.531.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G10509, Ftri16G18836, Ftri7G20581 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G55960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012921m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g17810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g034690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1676 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04370 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0402s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17440 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10331, nbisL1-mrna-9023 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037955 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37498, Lb0G38013, Lb4G25301, Lb4G25303 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1207, BH06.1256, CH06.1389 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0517900, gene-QOZ80_6BG0469940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0673550.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G007700, Oco12G007730 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g19390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G124000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404334, Pt_Chr0404368 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G001200, Chr11G017570, Chr14G006950, Chr21G005370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G395800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG027650, gene_TRIDC7BG018400 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G218400.1, TraesCS7B02G125300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb380950_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-45606, nbis-gene-52628 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29529, Zma_g31769 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.313, evm.TU.LG02.621, evm.TU.LG02.622 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g08790 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1932, evm.TU.Scaffold_6_RagTag.117 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8813 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9364 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-104, nbisL1-mrna-15041 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.85, evm.TU.utg000018l.26 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003308 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11891, nbisL1-mrna-9368 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17477, nbisL1-mrna-23744 |
| Salicaceae | Populus euphratica | 1 | populus_peu00872 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132617253, gene-LOC132627840, gene-LOC132637710 |
| Solanaceae | Solanum chilense | 2 | SOLCI000499700, SOLCI007039000 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107006962, gene-LOC107010790, gene-LOC107026311 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31815_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2575, TC06G0539, TC06G0540 |
| Zosteraceae | Zostera marina | 2 | Zosma03g09130.v3.1, Zosma05g21990.v3.1 |