halophFGD

Basic Information

Locus ID: Sgl28603

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: von Willebrand factor type A domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB3	43243806	43249117	+	Sgl28603

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.39	60,000.85 Da	30.94	82.83	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01419	Jacalin-like lectin domain	422	538	2.9E-8	IPR001229
Pfam	PF00092	von Willebrand factor type A domain	79	239	7.3E-16	IPR002035
SUPERFAMILY	SSF53300	vWA-like	76	252	1.59E-21	IPR036465
SUPERFAMILY	SSF51101	Mannose-binding lectins	388	537	4.58E-18	IPR036404
Gene3D	G3DSA:2.100.10.30	-	387	540	6.7E-28	IPR036404
Gene3D	G3DSA:3.40.50.410	von Willebrand factor, type A domain	79	251	1.9E-23	IPR036465
SMART	SM00327	VWA_4	77	254	1.0E-8	IPR002035
SMART	SM00915	Jacalin_2	405	539	0.0019	IPR001229
ProSiteProfiles	PS50234	VWFA domain profile.	79	249	14.884426	IPR002035
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	389	539	15.407968	IPR001229

Best hit

Source	Best Hit ID	Description
TAIR	AT5G60710.1	Zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_021851739.1	uncharacterized protein LOC110791292 [Spinacia oleracea]
TrEMBL	A0A0K9RNL7	VWFA domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_051700 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12637, gene_19724, gene_25127, gene_5557
Amaranthaceae	Atriplex hortensis	33	Ah004554, Ah004555, Ah008618, Ah008941, Ah008942, Ah008943 ... Ah008944, Ah008946, Ah008947, Ah008949, Ah008950, Ah008951, Ah008954, Ah008956, Ah008957, Ah008958, Ah008959, Ah008960, Ah008961, Ah008962, Ah008963, Ah008964, Ah011085, Ah011087, Ah011090, Ah011091, Ah011092, Ah011093, Ah011094, Ah011095, Ah014044, Ah032780, Ah032782
Amaranthaceae	Beta vulgaris	19	BVRB_2g040300, BVRB_2g040310, BVRB_2g040320, BVRB_4g088840 ... BVRB_4g088880, BVRB_4g089230, BVRB_4g089240, BVRB_4g089250, BVRB_5g098660, BVRB_6g130100, BVRB_6g130110, BVRB_6g130120, BVRB_6g130290, BVRB_6g130300, BVRB_6g130310, BVRB_6g130320, BVRB_6g130350, BVRB_8g181490, BVRB_8g181510
Amaranthaceae	Salicornia bigelovii	10	Sbi_jg18355, Sbi_jg18358, Sbi_jg21440, Sbi_jg21441 ... Sbi_jg25197, Sbi_jg36304, Sbi_jg36742, Sbi_jg36747, Sbi_jg43331, Sbi_jg45134
Amaranthaceae	Salicornia europaea	8	Seu_jg18558, Seu_jg19550, Seu_jg27039, Seu_jg27290 ... Seu_jg4372, Seu_jg4546, Seu_jg4684, Seu_jg4686
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00001756, GOSA_00007488, GOSA_00008850, GOSA_00008851 ... GOSA_00017414, GOSA_00017419, GOSA_00029525
Amaranthaceae	Suaeda glauca	41	Sgl02639, Sgl07797, Sgl23473, Sgl23476, Sgl23477, Sgl23478 ... Sgl24186, Sgl24187, Sgl28601, Sgl28603, Sgl28604, Sgl28605, Sgl29363, Sgl29364, Sgl51489, Sgl52442, Sgl52529, Sgl52551, Sgl52556, Sgl52557, Sgl52558, Sgl52559, Sgl52568, Sgl52569, Sgl56777, Sgl57733, Sgl57810, Sgl57826, Sgl57831, Sgl57832, Sgl57833, Sgl57834, Sgl57843, Sgl57844, Sgl62807, Sgl62809, Sgl67424, Sgl67425, Sgl71598, Sgl73856, Sgl77360
Amaranthaceae	Chenopodium album	26	gene:ENSEOMG00000008894, gene:ENSEOMG00000011025 ... gene:ENSEOMG00000011045, gene:ENSEOMG00000011641, gene:ENSEOMG00000012048, gene:ENSEOMG00000014928, gene:ENSEOMG00000019897, gene:ENSEOMG00000026748, gene:ENSEOMG00000028059, gene:ENSEOMG00000028378, gene:ENSEOMG00000029056, gene:ENSEOMG00000030616, gene:ENSEOMG00000030637, gene:ENSEOMG00000030738, gene:ENSEOMG00000040604, gene:ENSEOMG00000040631, gene:ENSEOMG00000041108, gene:ENSEOMG00000041350, gene:ENSEOMG00000042122, gene:ENSEOMG00000042242, gene:ENSEOMG00000042788, gene:ENSEOMG00000043456, gene:ENSEOMG00000043705, gene:ENSEOMG00000044311, gene:ENSEOMG00000044632, gene:ENSEOMG00000046116
Amaranthaceae	Chenopodium quinoa	21	CQ.Regalona.r1.3AG0021290, CQ.Regalona.r1.3AG0021300 ... CQ.Regalona.r1.3BG0022120, CQ.Regalona.r1.3BG0022130, CQ.Regalona.r1.4AG0020880, CQ.Regalona.r1.4AG0023650, CQ.Regalona.r1.4AG0023660, CQ.Regalona.r1.4AG0023670, CQ.Regalona.r1.4BG0021520, CQ.Regalona.r1.4BG0022910, CQ.Regalona.r1.4BG0024940, CQ.Regalona.r1.4BG0024970, CQ.Regalona.r1.4BG0024980, CQ.Regalona.r1.4BG0024990, CQ.Regalona.r1.4BG0025000, CQ.Regalona.r1.4BG0025010, CQ.Regalona.r1.4BG0025020, CQ.Regalona.r1.4BG0025030, CQ.Regalona.r1.9AG0019000, CQ.Regalona.r1.9AG0019010, CQ.Regalona.r1.9AG0019030
Arecaceae	Cocos nucifera	3	COCNU_06G013160, COCNU_06G013170, COCNU_14G008950
Arecaceae	Phoenix dactylifera	5	gene-LOC103698094, gene-LOC103700309, gene-LOC103717798 ... gene-LOC108511672, gene-LOC120113379
Asteraceae	Flaveria trinervia	7	Ftri15G13392, Ftri15G20414, Ftri15G25629, Ftri15G32974 ... Ftri9G05802, Ftri9G15663, FtriNA05134
Plumbaginaceae	Limonium bicolor	11	Lb0G37616, Lb1G03516, Lb2G11598, Lb3G17852, Lb3G17853 ... Lb3G18534, Lb3G21336, Lb3G21343, Lb6G29914, Lb6G29915, Lb7G34744
Poaceae	Echinochloa crus-galli	51	AH01.1878, AH01.3370, AH01.3372, AH03.739, AH04.1017 ... AH04.1370, AH04.2035, AH04.861, AH04.862, AH05.3690, AH05.3691, AH05.4255, AH05.4256, AH05.4258, AH05.4259, AH05.4262, AH05.4264, AH05.4266, AH05.527, AH05.528, AH06.3097, AH06.3099, BH01.3693, BH01.3694, BH01.3695, BH01.3696, BH03.873, BH03.874, BH04.1943, BH04.1952, BH04.1983, BH05.3552, BH05.997, BH08.1211, BH08.2245, CH01.3959, CH01.3960, CH01.3961, CH03.979, CH03.980, CH04.1560, CH04.2288, CH04.827, CH04.830, CH04.836, CH04.968, CH05.3908, CH05.3911, CH05.658, CH05.659, CH08.1366
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_2BG0180490, gene-QOZ80_3AG0251400 ... gene-QOZ80_3AG0251410, gene-QOZ80_3AG0251420, gene-QOZ80_3BG0276600, gene-QOZ80_3BG0276610, gene-QOZ80_3BG0276620, gene-QOZ80_4AG0323250, gene-QOZ80_4AG0323260, gene-QOZ80_4BG0352390, gene-QOZ80_4BG0352400, gene-QOZ80_4BG0352410, gene-QOZ80_5AG0405330, gene-QOZ80_5AG0405360, gene-QOZ80_7AG0563270, gene-QOZ80_8AG0617800, gene-QOZ80_8AG0628550, gene-QOZ80_8AG0637930, gene-QOZ80_8BG0666400, gene-QOZ80_9BG0696580
Poaceae	Hordeum vulgare	34	HORVU.MOREX.r3.1HG0000260.1, HORVU.MOREX.r3.1HG0002810.1 ... HORVU.MOREX.r3.1HG0004990.1, HORVU.MOREX.r3.1HG0015620.1, HORVU.MOREX.r3.2HG0100750.1, HORVU.MOREX.r3.2HG0108090.1, HORVU.MOREX.r3.2HG0108100.1, HORVU.MOREX.r3.2HG0108110.1, HORVU.MOREX.r3.3HG0314120.1, HORVU.MOREX.r3.3HG0328100.1, HORVU.MOREX.r3.4HG0418330.1, HORVU.MOREX.r3.5HG0427460.1, HORVU.MOREX.r3.5HG0427470.1, HORVU.MOREX.r3.5HG0427480.1, HORVU.MOREX.r3.5HG0427490.1, HORVU.MOREX.r3.5HG0427500.1, HORVU.MOREX.r3.5HG0427510.1.CDS1, HORVU.MOREX.r3.5HG0427520.1, HORVU.MOREX.r3.5HG0427530.1, HORVU.MOREX.r3.5HG0427540.1, HORVU.MOREX.r3.5HG0427550.1.CDS1, HORVU.MOREX.r3.5HG0427560.1, HORVU.MOREX.r3.5HG0427570.1, HORVU.MOREX.r3.5HG0480890.1, HORVU.MOREX.r3.5HG0480940.1, HORVU.MOREX.r3.5HG0482120.1, HORVU.MOREX.r3.6HG0548350.1, HORVU.MOREX.r3.7HG0658930.1, HORVU.MOREX.r3.7HG0739230.1, HORVU.MOREX.r3.7HG0750940.1, HORVU.MOREX.r3.UnG0763590.1, HORVU.MOREX.r3.UnG0763600.1, HORVU.MOREX.r3.UnG0763610.1, HORVU.MOREX.r3.UnG0763620.1
Poaceae	Lolium multiflorum	15	gene-QYE76_012757, gene-QYE76_015859, gene-QYE76_015860 ... gene-QYE76_016817, gene-QYE76_028127, gene-QYE76_029897, gene-QYE76_029898, gene-QYE76_037831, gene-QYE76_038375, gene-QYE76_048482, gene-QYE76_048483, gene-QYE76_048485, gene-QYE76_048487, gene-QYE76_049176, gene-QYE76_065104
Poaceae	Oryza coarctata	15	Oco01G010570, Oco02G010360, Oco02G010370, Oco02G011310 ... Oco05G015420, Oco05G015430, Oco06G015930, Oco19G009660, Oco21G006400, Oco21G008370, Oco23G001610, Oco23G003900, Oco24G003420, Oco24G003440, Oco24G003920
Poaceae	Oryza sativa	20	LOC_Os01g24710.2, LOC_Os01g25160.1, LOC_Os01g25280.1 ... LOC_Os03g28160.2, LOC_Os03g28170.1, LOC_Os04g03320.1, LOC_Os04g03360.1, LOC_Os04g22900.2, LOC_Os05g05170.1, LOC_Os06g07250.1, LOC_Os06g07300.1, LOC_Os06g12180.1, LOC_Os10g04270.1, LOC_Os11g39480.1, LOC_Os12g05020.1, LOC_Os12g09700.1, LOC_Os12g09720.1, LOC_Os12g12600.1, LOC_Os12g12720.1, LOC_Os12g14440.1
Poaceae	Paspalum vaginatum	11	gene-BS78_05G109400, gene-BS78_05G243200, gene-BS78_K202100 ... gene-BS78_05G275100, gene-BS78_07G031400, gene-BS78_07G031500, gene-BS78_07G031600, gene-BS78_07G031700, gene-BS78_07G197700, gene-BS78_09G040400, gene-BS78_K257900
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0106835, Pt_Chr0108016, Pt_Chr0205500, Pt_Chr0205504 ... Pt_Chr0206970, Pt_Chr0404906, Pt_Chr0500552, Pt_Chr0500553, Pt_Chr0700172, Pt_Chr0700173
Poaceae	Sporobolus alterniflorus	7	Chr01G012590, Chr01G024560, Chr01G024570, Chr18G001290 ... Chr26G001210, Chr26G001220, Chr27G002080
Poaceae	Thinopyrum elongatum	16	Tel1E01G006500, Tel1E01G010300, Tel2E01G091300 ... Tel2E01G175600, Tel2E01G188200, Tel3E01G058700, Tel3E01G701900, Tel4E01G020400, Tel4E01G020500, Tel4E01G048800, Tel4E01G199100, Tel5E01G079400, Tel5E01G079500, Tel7E01G300000, Tel7E01G976600, Telscf40201G000100
Poaceae	Triticum dicoccoides	27	gene_TRIDC1AG001150, gene_TRIDC1AG053430 ... gene_TRIDC1BG001690, gene_TRIDC1BG063780, gene_TRIDC2AG003620, gene_TRIDC2AG009520, gene_TRIDC2AG082380, gene_TRIDC2BG004190, gene_TRIDC2BG004490, gene_TRIDC2BG004500, gene_TRIDC2BG004510, gene_TRIDC2BG007630, gene_TRIDC2BG011630, gene_TRIDC2BG090470, gene_TRIDC3AG062900, gene_TRIDC3BG070540, gene_TRIDC3BG072020, gene_TRIDC4AG030380, gene_TRIDC4BG000460, gene_TRIDC4BG000470, gene_TRIDC4BG004190, gene_TRIDC4BG020140, gene_TRIDC5AG062470, gene_TRIDC5BG002800, gene_TRIDC7AG018020, gene_TRIDC7BG007430, gene_TRIDC7BG074330
Poaceae	Triticum aestivum	64	TraesCS1A02G010600.1, TraesCS1A02G010800.1 ... TraesCS1A02G011300.1, TraesCS1B02G013200.1, TraesCS1B02G013300.1, TraesCS1B02G014200.1, TraesCS1B02G014600.1, TraesCS1B02G016300.1, TraesCS1B02G017000.1, TraesCS1B02G398600.1, TraesCS1D02G006600.1, TraesCS1D02G007300.1, TraesCS2A02G033900.1, TraesCS2A02G061200.1, TraesCS2A02G086000.1, TraesCS2A02G563700.1, TraesCS2B02G047600.1, TraesCS2B02G047700.1.cds1, TraesCS2B02G050000.1, TraesCS2B02G050100.1, TraesCS2B02G050200.1, TraesCS2B02G082900.1, TraesCS2B02G100700.1, TraesCS2B02G100800.1, TraesCS2B02G625000.1, TraesCS2D02G035900.1, TraesCS2D02G041200.1, TraesCS2D02G083600.1, TraesCS3A02G444600.1, TraesCS3B02G478800.1, TraesCS3B02G479000.1, TraesCS3B02G479200.1, TraesCS3D02G030000.1, TraesCS3D02G274000.1, TraesCS3D02G437000.1, TraesCS3D02G437200.1, TraesCS4A02G190700.1, TraesCS4A02G307400.1, TraesCS4A02G496200.1.cds1, TraesCS4B02G009300.1, TraesCS4B02G024500.1, TraesCS4B02G130000.1, TraesCS4D02G006500.1, TraesCS4D02G006600.1, TraesCS4D02G022300.1, TraesCS4D02G122600.1, TraesCS5A02G445000.1, TraesCS7A02G147400.1, TraesCS7A02G554700.1, TraesCS7A02G555000.1, TraesCS7A02G555100.1, TraesCS7B02G050700.1, TraesCS7B02G050800.1, TraesCS7B02G344700.1, TraesCS7B02G478400.1, TraesCS7B02G478500.1, TraesCS7B02G478900.1, TraesCS7B02G479700.1, TraesCS7D02G149200.1, TraesCSU02G005600.1, TraesCSU02G066600.1, TraesCSU02G172200.1, TraesCSU02G189900.1, TraesCSU02G213600.1
Poaceae	Zea mays	11	Zm00001eb097060_P001, Zm00001eb097070_P001 ... Zm00001eb195670_P001, Zm00001eb265850_P001, Zm00001eb265880_P003, Zm00001eb265890_P001, Zm00001eb265900_P002, Zm00001eb304540_P001, Zm00001eb355410_P002, Zm00001eb392870_P001, Zm00001eb407630_P001
Poaceae	Zoysia japonica	9	nbis-gene-12071, nbis-gene-12077, nbis-gene-12079 ... nbis-gene-18211, nbis-gene-41245, nbis-gene-42660, nbis-gene-43547, nbis-gene-43560, nbis-gene-48312
Poaceae	Zoysia macrostachya	7	Zma_g1048, Zma_g1049, Zma_g1050, Zma_g23294, Zma_g23835 ... Zma_g27683, Zma_g3419
Portulacaceae	Portulaca oleracea	13	evm.TU.LG02.909, evm.TU.LG04.3119, evm.TU.LG07.1701 ... evm.TU.LG09.1065, evm.TU.LG09.1066, evm.TU.LG09.1067, evm.TU.LG14.1857, evm.TU.LG16.496, evm.TU.LG16.497, evm.TU.LG20.105, evm.TU.LG23.749, evm.TU.LG23.750, evm.TU.LG23.751
Rhizophoraceae	Bruguiera sexangula	27	evm.TU.34420.1, evm.TU.41038.7, evm.TU.41076.1 ... evm.TU.41352.1, evm.TU.41506.1, evm.TU.43310.2, evm.TU.43777.1, evm.TU.44341.1, evm.TU.44537.1, evm.TU.44582.1, evm.TU.44719.4, evm.TU.46175.12, evm.TU.46225.1, evm.TU.57505.1, evm.TU.57506.1, evm.TU.Scaffold_1127_RagTag.1, evm.TU.Scaffold_1297_RagTag.2, evm.TU.Scaffold_12_RagTag.577, evm.TU.Scaffold_12_RagTag.665, evm.TU.Scaffold_12_RagTag.889, evm.TU.Scaffold_17_RagTag.596, evm.TU.Scaffold_2554_RagTag.2, evm.TU.Scaffold_382_RagTag.1, evm.TU.Scaffold_382_RagTag.6, evm.TU.Scaffold_3_RagTag.123, evm.TU.Scaffold_3_RagTag.128, evm.TU.Scaffold_441_RagTag.7
Rhizophoraceae	Carallia pectinifolia	12	nbisL1-mrna-24149, nbisL1-mrna-24153, nbisL1-mrna-24155 ... nbisL1-mrna-24156, nbisL1-mrna-24157, nbisL1-mrna-30651, nbisL1-mrna-30652, nbisL1-mrna-30653, nbisL1-mrna-30654, nbisL1-mrna-30655, nbisL1-mrna-30658, nbisL1-mrna-7450
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16297, nbisL1-mrna-7472
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-19840, nbisL1-mrna-19841, nbisL1-mrna-19842 ... nbisL1-mrna-19848, nbisL1-mrna-19850
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000027l.213, evm.TU.utg000027l.214
Rhizophoraceae	Kandelia obovata	2	Maker00018069, Maker00018119
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-19036, nbisL1-mrna-19037, nbisL1-mrna-5768
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12053, nbisL1-mrna-12054, nbisL1-mrna-12055
Solanaceae	Lycium barbarum	1	gene-LOC132619677
Solanaceae	Solanum chilense	1	SOLCI002665800