Basic Information
Locus ID:
Sgl28400
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Plant transposase (Ptta/En/Spm family)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 41897252 | 41901393 | + | Sgl28400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 63,327.67 Da | 62.08 | 55.89 | -1.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 365 | 414 | 5.2E-7 | IPR004252 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 195 | - | - |
| Coils | Coil | Coil | 179 | 199 | - | - |
| Coils | Coil | Coil | 124 | 144 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021852516.1 | uncharacterized protein LOC110792028 isoform X5 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9QZ18 | Transposase_23 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_125390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg61541 |
| Amaranthaceae | Suaeda glauca | 65 | Sgl03681, Sgl04249, Sgl04994, Sgl04995, Sgl08792, Sgl09205 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0009940 |