Basic Information
Locus ID:
Sgl28348
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Mitochondrial protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 41495423 | 41508512 | + | Sgl28348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 121,049.15 Da | 51.82 | 72.08 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 936 | 1075 | 1.11433E-58 | IPR000608 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 80 | 218 | 2.5E-15 | - |
| Pfam | PF13976 | GAG-pre-integrase domain | 482 | 547 | 4.9E-10 | IPR025724 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 938 | 1074 | 5.8E-47 | IPR000608 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 561 | 719 | 7.46E-37 | IPR012337 |
| SUPERFAMILY | SSF54495 | UBC-like | 932 | 1080 | 2.26E-54 | IPR016135 |
| Gene3D | G3DSA:3.30.420.10 | - | 554 | 731 | 1.6E-34 | IPR036397 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 926 | 1081 | 4.6E-65 | IPR016135 |
| SMART | SM00212 | ubc_7 | 937 | 1080 | 4.0E-69 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 934 | 1080 | 54.950054 | IPR000608 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 547 | 723 | 20.427382 | IPR001584 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 1007 | 1022 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 844 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 923 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 897 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78870.2 | ubiquitin-conjugating enzyme 35. UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant's viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B. | 0 |
| RefSeq | XP_021320624.1 | uncharacterized protein LOC110437007 [Sorghum bicolor] | 0 |
| Q94A97 | Ubiquitin-conjugating enzyme E2 35 OS=Arabidopsis thaliana OX=3702 GN=UBC35 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6PI82 | Integrase catalytic domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_09120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 11 | Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg13583, Seu_jg220, Seu_jg24372 |
| Amaranthaceae | Suaeda glauca | 22 | Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004351, gene:ENSEOMG00000049261 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30096180 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G03871 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03155.v2.2 |
| Brassicaceae | Brassica nigra | 13 | BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g15590, gene.Thate06g10480 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7277 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00201, Lb1G06209 |
| Poaceae | Echinochloa crus-galli | 3 | CH01.4204, CH02.4285, CH02.754 |
| Poaceae | Lolium multiflorum | 23 | gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ... |
| Poaceae | Sporobolus alterniflorus | 24 | Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g29300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075978 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045 |