Basic Information
Locus ID:
Sgl28212
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 40243415 | 40253681 | - | Sgl28212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 46,452.39 Da | 58.16 | 79.43 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02947 | TRX_family | 85 | 155 | 2.34675E-27 | - |
| CDD | cd16745 | RING-HC_AtRMA_like | 220 | 270 | 1.42337E-23 | - |
| Pfam | PF00085 | Thioredoxin | 81 | 159 | 6.6E-24 | IPR013766 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 222 | 268 | 2.4E-8 | IPR018957 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 75 | 158 | 5.91E-30 | IPR036249 |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 282 | 1.9E-15 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 79 | 189 | 1.6E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 206 | 283 | 8.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 222 | 268 | 6.9E-9 | IPR001841 |
| TIGRFAM | TIGR01068 | thioredoxin: thioredoxin | 83 | 159 | 4.4E-29 | IPR005746 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 222 | 269 | 12.474524 | IPR001841 |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 68 | 200 | 13.289427 | IPR013766 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 237 | 246 | - | IPR017907 |
| ProSitePatterns | PS00194 | Thioredoxin family active site. | 99 | 117 | - | IPR017937 |
| PRINTS | PR00421 | Thioredoxin family signature | 106 | 115 | 7.1E-8 | - |
| PRINTS | PR00421 | Thioredoxin family signature | 98 | 106 | 7.1E-8 | - |
| PRINTS | PR00421 | Thioredoxin family signature | 146 | 157 | 7.1E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15360.1 | thioredoxin M-type 4. encodes a prokaryotic thioredoxin | 0 |
| RefSeq | XP_010695001.2 | E3 ubiquitin-protein ligase RMA3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SEU6 | Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g15360 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J5ABL2 | RING-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_008934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology