Basic Information
Locus ID:
Sgl28029
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 38752752 | 38755058 | - | Sgl28029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 87,335.73 Da | 36.11 | 82.19 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 45 | 312 | 1.34379E-52 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 51 | 311 | 3.1E-40 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 570 | 653 | 8.7E-15 | IPR026960 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2 | 277 | 7.29E-15 | IPR043502 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 31 | 312 | 13.159908 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 768 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29090.1 | Ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_021857848.1 | uncharacterized protein LOC110797061 [Spinacia oleracea] | 0 |
| Q03274 | Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9IF13 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50531 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||