Basic Information
Locus ID:
Sgl27725
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 36040533 | 36049679 | - | Sgl27725 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 107,413.77 Da | 33.67 | 104.69 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 227 | 256 | 0.07 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 87 | 114 | 0.015 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 259 | 307 | 8.6E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 328 | 375 | 6.5E-18 | IPR002885 |
| Pfam | PF00083 | Sugar (and other) transporter | 512 | 939 | 1.7E-40 | IPR005828 |
| Pfam | PF13041 | PPR repeat family | 152 | 201 | 1.8E-17 | IPR002885 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 467 | 938 | 4.45E-70 | IPR036259 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 15 | 167 | 4.3E-17 | IPR011990 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 477 | 942 | 1.3E-88 | IPR036259 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 290 | 465 | 4.3E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 168 | 289 | 2.1E-35 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 331 | 365 | 1.8E-11 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 87 | 118 | 5.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 262 | 295 | 1.9E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 226 | 259 | 6.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 190 | 224 | 0.003 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 155 | 189 | 5.1E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 297 | 330 | 3.1E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 153 | 187 | 12.375365 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 224 | 258 | 9.13082 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 259 | 293 | 12.737088 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 364 | 398 | 8.823904 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 294 | 328 | 11.136739 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 329 | 363 | 14.52378 | IPR002885 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 482 | 934 | 40.684933 | IPR020846 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 188 | 223 | 8.61564 | IPR002885 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021846466.1 | organic cation/carnitine transporter 7-like [Spinacia oleracea] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LVV0 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology