Basic Information
Locus ID:
Sgl27623
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
cellular response to glucose starvation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 34743966 | 34754685 | + | Sgl27623 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 56,138.13 Da | 72.90 | 61.52 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 59 | 109 | 2.51E-5 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 103 | 8.742016 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 324 | - | - |
| Coils | Coil | Coil | 108 | 128 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021729363.1 | uncharacterized protein LOC110696384 [Chenopodium quinoa] | 0 |
| Q93YV5 | E3 ubiquitin-protein ligase DA2 OS=Arabidopsis thaliana OX=3702 GN=DA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RTP8 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_034220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19197, jg21232 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7624 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007115 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19032, Sbi_jg37462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5303 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015301 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl03540, Sgl08687, Sgl22378, Sgl27623 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010283, gene:ENSEOMG00000029430 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0015660, CQ.Regalona.r1.4BG0016900 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30163840 |
| Apiaceae | Apium graveolens | 3 | Ag11G03207, Ag3G02453, AgUnG01518 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G014490, COCNU_02G002630, COCNU_03G013570 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701024, gene-LOC103707181, gene-LOC103715950 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1802.V1.1, AsparagusV1_01.432.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G23445, Ftri3G13063 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17145.1, AT1G78420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008156m.g.v1.0, Thhalv10018644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15270.v2.2, Sp5g33520.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g057830.2N, BniB04g031540.2N, BniB05g054310.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0843 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0969 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0017s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g10200, gene.Thate05g06020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9288 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1098 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008437 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23223, Lb7G34673 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.295, BH06.2297, BH06.404, BH07.1118, CH02.229, CH06.401 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0107600, gene-QOZ80_2BG0161220 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.6HG0583520.1, HORVU.MOREX.r3.7HG0653180.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_022008, gene-QYE76_022275, gene-QYE76_036544 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G006590, Oco04G006920, Oco11G002620, Oco11G014150 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g14720.1, LOC_Os06g06120.1, LOC_Os06g44275.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G101600, gene-BS78_10G046900 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0206429, Pt_Chr0401466, Pt_Chr0402155, Pt_Chr0405549 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G017540, Chr04G009500, Chr06G031990, Chr0G013560 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G377700, Tel7E01G223700, Tel7E01G860200 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC6AG027660, gene_TRIDC6BG033820 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS6A02G189300.1, TraesCS6B02G215300.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb204560_P001, Zm00001eb238650_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-34209, nbis-gene-34748, nbis-gene-53135 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12508, Zma_g15404, Zma_g29133, Zma_g31377 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2228, evm.TU.LG14.1403 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc02g24770, gene.Posoc02g26630, gene.Posoc04g06260 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.109, evm.TU.Scaffold_9_RagTag.88 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10525, nbisL1-mrna-22101 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20771, nbisL1-mrna-5369 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10665, nbisL1-mrna-7602 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.64, evm.TU.utg000006l.66 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013276, Maker00017737 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-6689, nbisL1-mrna-9275 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21625, nbisL1-mrna-6922 |
| Salicaceae | Populus euphratica | 2 | populus_peu00715, populus_peu17788 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616686 |
| Solanaceae | Solanum chilense | 1 | SOLCI001285700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026557 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24533_chr08_+, gene_16953 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2487, TC06G0662 |
| Zosteraceae | Zostera marina | 1 | Zosma03g33020.v3.1 |