halophFGD

Basic Information

Locus ID: Sgl27117

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: macromolecule glycosylation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB3	26017099	26029574	-	Sgl27117

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.59	68,441.22 Da	46.29	83.16	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	216	271	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	226	255	-	-
Coils	Coil	Coil	428	469	-	-
Coils	Coil	Coil	537	564	-	-
Coils	Coil	Coil	361	399	-	-

KEGG Pathway

KO Term:

K03002 (DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6])

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03020 (RNA polymerase) map03020 (RNA polymerase)

Reaction:

R00435 (ATP + RNA <=> Diphosphate + RNA) R00441 (GTP + RNA <=> Diphosphate + RNA) R00442 (CTP + RNA <=> Diphosphate + RNA) R00443 (UTP + RNA <=> Diphosphate + RNA)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_048491184.1	uncharacterized protein LOC125492587 [Beta vulgaris subsp. vulgaris]	0
TrEMBL	A0A0K9R8W9	NAC domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_098280 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	5	Sgl21827, Sgl21836, Sgl21857, Sgl27117, Sgl27125