Basic Information
Locus ID:
Sgl26881
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 20953375 | 20957667 | + | Sgl26881 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 56,244.64 Da | 35.55 | 103.38 | 0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 52 | 312 | 8.8E-37 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 348 | 485 | 4.5E-9 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 11 | 488 | 6.28E-66 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 491 | 9.0E-87 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 484 | 37.707397 | IPR020846 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 509 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_010675318.1 | organic cation/carnitine transporter 7 [Beta vulgaris subsp. vulgaris] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LVU9 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology