Basic Information
Locus ID:
Sgl26827
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Uncharacterized protein K02A2.6-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 20139194 | 20144621 | + | Sgl26827 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 56,250.03 Da | 57.97 | 60.29 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 368 | 476 | 2.2341E-49 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 367 | 476 | 3.8E-16 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 300 | 482 | 1.78E-51 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 367 | 476 | 1.6E-31 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 298 | 356 | 1.7E-6 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 369 | 401 | 1.6E-31 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 209 | - | - |
| Coils | Coil | Coil | 180 | 200 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010676986.1 | uncharacterized protein LOC104892696 [Beta vulgaris subsp. vulgaris] | 0 |
| P10401 | Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2HAW5 | Ribonuclease H OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS143 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg61541 |
| Amaranthaceae | Suaeda glauca | 65 | Sgl03681, Sgl04249, Sgl04994, Sgl04995, Sgl08792, Sgl09205 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0009940 |