Basic Information
Locus ID:
Sgl26564
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB3 | 14811667 | 14827373 | + | Sgl26564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 41,843.77 Da | 37.77 | 84.04 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16124 | RecQ zinc-binding | 279 | 327 | 1.7E-12 | IPR032284 |
| Pfam | PF09382 | RQC domain | 330 | 366 | 1.1E-4 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 147 | 252 | 2.6E-20 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 16 | 121 | 2.25E-13 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 125 | 366 | 4.46E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 126 | 262 | 1.5E-37 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 125 | 6.7E-37 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 270 | 368 | 6.8E-27 | IPR036388 |
| SMART | SM00490 | helicmild6 | 172 | 253 | 3.6E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 2 | 366 | 9.1E-108 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 143 | 299 | 19.013744 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 119 | 13.357275 | IPR014001 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.2 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021769788.1 | uncharacterized protein LOC110734037 isoform X2 [Chenopodium quinoa] | 0 |
| O34748 | ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S2K9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_000900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology