Basic Information
Locus ID:
Sgl25769
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposon protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 67372456 | 67377194 | + | Sgl25769 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 89,851.40 Da | 51.55 | 61.70 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 34 | 126 | 1.5E-21 | IPR025452 |
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 554 | 681 | 2.2E-15 | IPR004252 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 454 | - | - |
| Coils | Coil | Coil | 357 | 377 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048491649.1 | uncharacterized protein LOC125492938 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803ND29 | DUF4218 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg61541 |
| Amaranthaceae | Suaeda glauca | 65 | Sgl03681, Sgl04249, Sgl04994, Sgl04995, Sgl08792, Sgl09205 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0009940 |