Basic Information
Locus ID:
Sgl25149
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 59180738 | 59198945 | - | Sgl25149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 96,785.02 Da | 51.26 | 72.31 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 220 | 249 | 5.80066E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 576 | 705 | 9.00125E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 381 | 551 | 6.5E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 588 | 696 | 6.4E-34 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 429 | 712 | 8.11E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 211 | 249 | 9.41E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 333 | 565 | 2.7E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 566 | 737 | 1.5E-59 | IPR027417 |
| SMART | SM00487 | ultradead3 | 376 | 579 | 2.4E-63 | IPR014001 |
| SMART | SM00456 | ww_5 | 218 | 251 | 2.8E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 616 | 696 | 5.6E-35 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 217 | 251 | 11.0141 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 591 | 735 | 25.845482 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 388 | 562 | 30.138346 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 357 | 385 | 10.393079 | IPR014014 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 223 | 249 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 508 | 516 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 878 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 859 | 878 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_010694508.1 | ATP-dependent RNA helicase-like protein DB10 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NBD2 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology