Basic Information
Locus ID:
Sgl24731
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 55544320 | 55549554 | + | Sgl24731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 89,793.29 Da | 40.60 | 73.58 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00665 | Integrase core domain | 401 | 498 | 1.6E-8 | IPR001584 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 401 | 574 | 7.71E-38 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 395 | 589 | 2.5E-39 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 399 | 565 | 18.918982 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 720 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 713 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048498090.1 | uncharacterized protein LOC104892859 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2Z7AHC5 | Integrase catalytic domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_24735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||