Basic Information
Locus ID:
Sgl24620
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 54831081 | 54831755 | - | Sgl24620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 25,785.28 Da | 49.05 | 88.75 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 135 | 1.8E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 177 | 2.8E-6 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 89 | 131 | 8.683004 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 165 | - | - |
| Coils | Coil | Coil | 33 | 53 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27420.1 | carbon/nitrogen insensitive 1. Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. | 0 |
| RefSeq | XP_021771798.1 | RING-H2 finger protein ATL11-like [Chenopodium quinoa] | 0 |
| Q8LGA5 | E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0J8BE52 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g094430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12013 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005893 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg512 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4129 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008342, GOSA_00008343 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24620, Sgl24646, Sgl29765, Sgl29773 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009190, CQ.Regalona.r1.4BG0009300 |