Basic Information
Locus ID:
Sgl24613
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 54779389 | 54780274 | + | Sgl24613 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 27,939.21 Da | 45.49 | 69.37 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 169 | 212 | 1.9207E-15 | - |
| Pfam | PF13639 | Ring finger domain | 170 | 212 | 3.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 223 | 1.39E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 220 | 3.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 170 | 211 | 3.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 170 | 212 | 12.061441 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_021742433.1 | E3 ubiquitin-protein ligase ATL15-like [Chenopodium quinoa] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0J8BAJ8 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g097210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12012 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005915 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17023, Sbi_jg61572 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg301 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008349 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl24613, Sgl29761, Sgl29766 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011364 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009290, CQ.Regalona.r1.4BG0009420 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0771, TC06G0772 |