Basic Information
Locus ID:
Sgl24430
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 53628348 | 53638579 | - | Sgl24430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 121,381.47 Da | 37.57 | 82.16 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 877 | 910 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 482 | 0.0074 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 851 | 1062 | 3.14E-17 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 409 | 915 | 1.18E-41 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 570 | 760 | 9.52E-8 | IPR036322 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 336 | 437 | 2.04E-9 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 931 | 1068 | 3.5E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 688 | 3.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 698 | 930 | 4.1E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 561 | 3.0E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 960 | 1002 | 6.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 574 | 614 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1016 | 1057 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 868 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 482 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 525 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 789 | 825 | 310.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.4E-13 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 871 | 910 | 6.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 435 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 571 | 82.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 342 | 384 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.296669 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 878 | 919 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 878 | 913 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 469 | 483 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1075 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1064 | 1096 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021772817.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIJ6 | Topless-related protein 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_060520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology