Basic Information
Locus ID:
Sgl24395
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 53418538 | 53424502 | - | Sgl24395 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 71,040.11 Da | 45.75 | 74.51 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 225 | 422 | 7.84031E-95 | - |
| CDD | cd18794 | SF2_C_RecQ | 423 | 556 | 1.02454E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 449 | 546 | 2.3E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 559 | 627 | 4.6E-13 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 233 | 399 | 2.7E-16 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 270 | 567 | 2.47E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 423 | 631 | 5.1E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 188 | 422 | 6.7E-82 | IPR027417 |
| SMART | SM00490 | helicmild6 | 465 | 547 | 2.8E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 227 | 431 | 8.0E-27 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 225 | 629 | 2.3E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 239 | 415 | 19.94647 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 444 | 587 | 18.983868 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 170 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_010674161.1 | ATP-dependent DNA helicase Q-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology