Basic Information
Locus ID:
Sgl24130
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 51768259 | 51774094 | - | Sgl24130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 25,326.42 Da | 60.15 | 84.11 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 132 | 213 | 3.27065E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 205 | 6.5E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 126 | 205 | 3.36E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 126 | 218 | 3.0E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 133 | 209 | 4.4E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 218 | 11.826953 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021734467.1 | RNA-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQZ6 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_151210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology