halophFGD

Basic Information

Locus ID: Sgl24103

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: TPL-binding domain in jasmonate signalling

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA3	51620570	51622447	+	Sgl24103

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.67	69,558.22 Da	39.70	77.98	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04301	NAT_SF	516	577	0.00778373	-
Pfam	PF16135	Tify domain binding domain	259	308	1.4E-15	IPR032308
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	355	410	2.88E-5	IPR011011
SUPERFAMILY	SSF55729	Acyl-CoA N-acyltransferases (Nat)	507	602	6.96E-9	IPR016181
Gene3D	G3DSA:3.40.630.30	-	499	608	4.3E-7	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	355	415	1.5E-8	IPR013083
Coils	Coil	Coil	19	43	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT2G37520.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain.
RefSeq	XP_048497738.1	increased DNA methylation 1 isoform X1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	F4IXE7	Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1
TrEMBL	A0A803KN34	PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg15008, jg16515, jg31996, jg32101, jg3525, jg37567
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14363, gene_20022, gene_23531, gene_26026
Amaranthaceae	Atriplex hortensis	5	Ah005354, Ah006225, Ah011548, Ah030112, Ah030696
Amaranthaceae	Beta vulgaris	5	BVRB_4g079890, BVRB_4g079900, BVRB_7g161170, BVRB_7g162630 ... BVRB_9g210440
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg11965, Sbi_jg15862, Sbi_jg17579, Sbi_jg27223 ... Sbi_jg33302, Sbi_jg46897, Sbi_jg46898, Sbi_jg56699, Sbi_jg62248
Amaranthaceae	Salicornia europaea	4	Seu_jg13888, Seu_jg21185, Seu_jg8008, Seu_jg827
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00005697, GOSA_00007402, GOSA_00009527, GOSA_00013763
Amaranthaceae	Suaeda glauca	8	Sgl24103, Sgl29282, Sgl71316, Sgl71730, Sgl74911, Sgl75301 ... Sgl80372, Sgl82834
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000005198, gene:ENSEOMG00000005207 ... gene:ENSEOMG00000007848, gene:ENSEOMG00000018855, gene:ENSEOMG00000028572, gene:ENSEOMG00000034234, gene:ENSEOMG00000035189, gene:ENSEOMG00000036484, gene:ENSEOMG00000037136, gene:ENSEOMG00000038171, gene:ENSEOMG00000038366, gene:ENSEOMG00000039376, gene:ENSEOMG00000043225, gene:ENSEOMG00000052297
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.4AG0004750, CQ.Regalona.r1.4BG0004740 ... CQ.Regalona.r1.7AG0016040, CQ.Regalona.r1.7AG0018840, CQ.Regalona.r1.7BG0017610, CQ.Regalona.r1.7BG0021420, CQ.Regalona.r1.9AG0010090, CQ.Regalona.r1.9BG0012370
Anacardiaceae	Pistacia vera	3	pistato.v30057570, pistato.v30270850, pistato.v30274050
Apiaceae	Apium graveolens	4	Ag10G01995, Ag11G04344, Ag2G02963, Ag4G01561
Arecaceae	Cocos nucifera	3	COCNU_08G010770, COCNU_09G008280, contig69591931G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103698933, gene-LOC120109901
Asparagaceae	Asparagus officinalis	4	AsparagusV1_04.3344.V1.1, AsparagusV1_05.2295.V1.1 ... AsparagusV1_05.2296.V1.1, AsparagusV1_07.1856.V1.1
Asteraceae	Flaveria trinervia	8	Ftri12G30739, Ftri16G01079, Ftri16G08677, Ftri16G13221 ... Ftri16G21994, Ftri16G30432, Ftri2G18215, Ftri6G19022
Brassicaceae	Arabidopsis thaliana	4	AT2G27980.1, AT2G36720.1, AT2G37520.1, AT3G53680.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10010118m.g.v1.0, Thhalv10016165m.g.v1.0 ... Thhalv10016173m.g.v1.0, Thhalv10016239m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g10800.v2.2, Sp4g19000.v2.2, Sp4g19840.v2.2 ... Sp5g08690.v2.2
Brassicaceae	Brassica nigra	7	BniB01g007330.2N, BniB01g007850.2N, BniB01g015970.2N ... BniB06g016770.2N, BniB06g016810.2N, BniB08g066810.2N, BniB08g068070.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1547, Ceq05G1632, Ceq08G1195
Casuarinaceae	Casuarina glauca	3	Cgl02G1601, Cgl05G1626, Cgl08G1228
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g09150, gene.Cymno05g16380
Dunaliellaceae	Dunaliella salina	2	Dusal.0262s00020.v1.0, Dusal.0268s00020.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g06290, gene.Thate04g01000, gene.Thate08g15770
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-5984, nbisL1-mrna-8622
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1253, evm.TU.LG01.2198, evm.TU.LG09.811
Plantaginaceae	Plantago ovata	5	Pov_00000911, Pov_00003301, Pov_00006288, Pov_00026474 ... Pov_00029137
Plumbaginaceae	Limonium bicolor	3	Lb2G09086, Lb2G09824, Lb3G19562
Poaceae	Echinochloa crus-galli	9	AH01.4148, AH06.16, AH06.3080, BH01.4459, BH06.2879, BH06.7 ... CH01.4718, CH06.8, CH06.995
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0243270, gene-QOZ80_3BG0284990 ... gene-QOZ80_6AG0551780, gene-QOZ80_6BG0457520, gene-QOZ80_6BG0505360
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0100540.1, HORVU.MOREX.r3.4HG0387300.1 ... HORVU.MOREX.r3.7HG0634470.1, HORVU.MOREX.r3.7HG0752940.1
Poaceae	Lolium multiflorum	3	gene-QYE76_016898, gene-QYE76_037059, gene-QYE76_068959
Poaceae	Oryza coarctata	4	Oco05G009780, Oco06G010070, Oco11G000130, Oco12G018110
Poaceae	Oryza sativa	3	LOC_Os03g17050.1, LOC_Os06g01170.1, LOC_Os06g51450.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G398800, gene-BS78_03G363400 ... gene-BS78_10G000400, gene-BS78_10G268100, gene-BS78_10G268800
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0102348, Pt_Chr0303237, Pt_Chr0404066, Pt_Chr0404085 ... Pt_Chr0404196
Poaceae	Sporobolus alterniflorus	8	Chr01G031200, Chr07G003700, Chr0G007420, Chr10G000920 ... Chr10G022790, Chr11G024820, Chr12G008420, Chr14G000340
Poaceae	Thinopyrum elongatum	3	Tel4E01G360800, Tel7E01G011300, Tel7E01G1027900
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG013600, gene_TRIDC4AG070730 ... gene_TRIDC4BG036730, gene_TRIDC7AG000290, gene_TRIDC7AG078400, gene_TRIDC7BG075090
Poaceae	Triticum aestivum	8	TraesCS4A02G099600.1, TraesCS4A02G498600.2 ... TraesCS4B02G204700.1, TraesCS4D02G205600.2, TraesCS7A02G002000.1, TraesCS7A02G569600.1, TraesCS7B02G489100.1, TraesCS7D02G543000.1
Poaceae	Zea mays	4	Zm00001eb005770_P004, Zm00001eb012650_P001 ... Zm00001eb229120_P001, Zm00001eb268390_P001
Poaceae	Zoysia japonica	3	nbis-gene-2059, nbis-gene-3706, nbis-gene-53464
Poaceae	Zoysia macrostachya	4	Zma_g1511, Zma_g28947, Zma_g33472, Zma_g3907
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.199, evm.TU.LG04.553, evm.TU.LG07.1550 ... evm.TU.LG15.1718, evm.TU.LG16.1013, evm.TU.LG20.1466
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g34490, gene.Posoc02g15100
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_14_RagTag.825, evm.TU.Scaffold_1_RagTag.1496 ... evm.TU.Scaffold_1_RagTag.1650, evm.TU.Scaffold_2_RagTag.773, evm.TU.Scaffold_2_RagTag.774, evm.TU.Scaffold_2_RagTag.935
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-16586, nbisL1-mrna-4273, nbisL1-mrna-4412 ... nbisL1-mrna-5446, nbisL1-mrna-6100
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-13658, nbisL1-mrna-15970, nbisL1-mrna-21080 ... nbisL1-mrna-4549, nbisL1-mrna-9902
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10039, nbisL1-mrna-17155, nbisL1-mrna-3830 ... nbisL1-mrna-3964, nbisL1-mrna-9460
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000009l.1105, evm.TU.utg000009l.910 ... evm.TU.utg000016l.503, evm.TU.utg000016l.601, evm.TU.utg000025l.49
Rhizophoraceae	Kandelia obovata	5	Maker00005034, Maker00005285, Maker00012211, Maker00016341 ... Maker00017036
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-12601, nbisL1-mrna-12690, nbisL1-mrna-15897 ... nbisL1-mrna-5051, nbisL1-mrna-7676
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-13624, nbisL1-mrna-23801, nbisL1-mrna-395 ... nbisL1-mrna-5807, nbisL1-mrna-5948
Salicaceae	Populus euphratica	8	populus_peu08313, populus_peu11277, populus_peu11623 ... populus_peu16543, populus_peu16544, populus_peu26601, populus_peu35388, populus_peu35528
Solanaceae	Lycium barbarum	5	gene-LOC132600489, gene-LOC132607063, gene-LOC132607144 ... gene-LOC132629970, gene-LOC132629977
Solanaceae	Solanum chilense	3	SOLCI001952200, SOLCI002178600, SOLCI003616300
Solanaceae	Solanum pennellii	4	gene-LOC107002398, gene-LOC107002562, gene-LOC107004678 ... gene-LOC107031751
Tamaricaceae	Reaumuria soongarica	4	STRG.3697_chr02_-, gene_4510, gene_5649, gene_6802
Tamaricaceae	Tamarix chinensis	3	TC02G1974, TC02G2604, TC03G1901
Zosteraceae	Zostera marina	3	Zosma02g21180.v3.1, Zosma04g23300.v3.1, Zosma06g29040.v3.1