Basic Information
Locus ID:
Sgl24096
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 51567528 | 51576043 | + | Sgl24096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 48,528.99 Da | 44.77 | 72.94 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 76 | 399 | 1.9E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 41 | 431 | 3.14E-122 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 32 | 436 | 1.4E-116 | IPR012334 |
| SMART | SM00710 | pbh1 | 238 | 259 | 110.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 261 | 281 | 7300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 291 | 312 | 0.37 | IPR006626 |
| SMART | SM00710 | pbh1 | 211 | 237 | 190.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 320 | 341 | 3100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 268 | 281 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021772474.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUV7 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_025850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology