Basic Information
Locus ID:
Sgl23498
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 46895356 | 46907691 | + | Sgl23498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 163,864.97 Da | 38.95 | 90.72 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 39 | 338 | 8.5164E-143 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 816 | 1100 | 6.85143E-143 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 1117 | 1415 | 1.66873E-137 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 1122 | 1411 | 5.0E-27 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 360 | 650 | 5.9E-28 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 818 | 1096 | 3.66E-34 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 38 | 337 | 4.45E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 1116 | 1416 | 1.02E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 654 | 5.49E-45 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 353 | 654 | 3.4E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 38 | 337 | 2.8E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 817 | 1098 | 5.3E-30 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 1115 | 1415 | 1.5E-44 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 1117 | 1416 | 34.881577 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 798 | 1101 | 28.515419 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 355 | 655 | 34.093929 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 39 | 339 | 31.138212 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021759066.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Chenopodium quinoa] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A7J7H7K1 | glycerophosphodiester phosphodiesterase OS=Camellia sinensis OX=4442 GN=HYC85_014889 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology