Basic Information
Locus ID:
Sgl23398
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 46276903 | 46278444 | + | Sgl23398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 59,347.57 Da | 53.04 | 84.09 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 2 | 39 | 1.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 45 | 8.24E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 42 | 2.1E-7 | - |
| SMART | SM00256 | fbox_2 | 5 | 46 | 1.8E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 8.782121 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 513 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17036.2 | - | 0 |
| RefSeq | XP_021852731.1 | uncharacterized protein LOC110792224 [Spinacia oleracea] | 0 |
| Q6DR20 | F-box protein At2g17036 OS=Arabidopsis thaliana OX=3702 GN=At2g17036 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QC74 | DUF295 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_195540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_16244, gene_21745, gene_21763, gene_26530 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah008814, Ah008815, Ah008816, Ah008817 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g076820, BVRB_9g224050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg50516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl23194, Sgl23396, Sgl23397, Sgl23398, Sgl28512, Sgl28513 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0013410, CQ.Regalona.r1.3AG0025460 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG02.1509, evm.TU.LG02.1510, evm.TU.LG02.1512 ... |