Basic Information
Locus ID:
Sgl23184
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 44688048 | 44693605 | + | Sgl23184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 97,402.14 Da | 54.86 | 75.83 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 572 | 599 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 742 | 777 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 655 | 693 | 2.0E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 569 | 879 | 7.46E-55 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 90 | 355 | 7.63E-21 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 546 | 882 | 1.2E-124 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 93 | 353 | 2.2E-25 | - |
| SMART | SM00320 | WD40_4 | 565 | 600 | 0.39 | IPR001680 |
| SMART | SM00220 | serkin_6 | 25 | 344 | 2.2E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 653 | 693 | 3.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 786 | 825 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 880 | 460.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 696 | 735 | 0.093 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 650 | 8.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 739 | 777 | 2.5E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 660 | 697 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 746 | 780 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 660 | 702 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 344 | 10.025966 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 746 | 780 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 764 | 778 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 764 | 778 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 680 | 694 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 637 | 651 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 63 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010694977.2 | protein SPA1-RELATED 4 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BAN3 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology